rs29245016 SNP Detail

Summary

• ID
  rs29245016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77280780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG AGTGTTGGAA TCCTGGCCTA
  Y
  GAAATAGACC TTTGGTCTAA TATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39063952	mCV22684984	ABI	CRAMUS_MOUSE	f	SNP		T	C	T
ss144701607	ENSMUSSNP6491497	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss324447430	CHEV_13_77271922	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29245016					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77280780 () rs orientation: forward

Symbol	Name	Function Class
Rr281682	regulatory region 281682	1620 bp proximal
Rr284991	regulatory region 284991	180 bp distal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123275	transcription start site region 123275	1332 bp upstream