rs29245066 SNP Detail

Summary

• ID
  rs29245066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38304870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TGCCTGGCTC AGAGCACACA
  R
  TTAATACCAG TGCAGCCAGG AGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39063854	mCV23687363	ABI	CRAMUS_MOUSE	f	SNP	G						A		A
ss51097459	NES14354891	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	G	A	G	A	A	G	A
ss148895301	ENSMUSSNP6094051	ENSEMBL	ENSEMBL_Sanger	f	SNP									A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29245066					SNP	G	G	G	G	G	G	A	G	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51097459	NES14354891	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38304870 () rs orientation: forward

Symbol	Name	Function Class
Rr271625	regulatory region 271625	1131 bp proximal
Rr275879	regulatory region 275879	870 bp distal
Rr279089	regulatory region 279089	444 bp proximal
Rr279090	regulatory region 279090	834 bp proximal
Rr279091	regulatory region 279091	1513 bp proximal