rs29245137 SNP Detail

Summary

• ID
  rs29245137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60801712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCGCGAG TGCTAAGATT
  ATAGGCATGT GTTACCACAT GCAGCTGAGG TAAGGATTCT TTTGAATGTA GGTCACTTTT
  GCACCAGCGT CGAGTTGAAA AGTCCCCAAG TTGGACCCTG GTGAGTGGAG TGTTCATCTT
  ACCTCCTTTG TTTTTCCAGA GAAGAGAGCA AGGCACAGGG AGTCTGTCTG GTACCCAGTC
  R
  GGCCTTTTTC TATCAAGAGG CAGGATGGAG CAGTGGGAAG GAAGTGAATA TACCAGATAG
  GATGGCTGTG ATAGCATGAC TGTATGCAGA GTGTTCTGAA GTTAGAGACT TAGTTCCTTG
  TGCCTGCTAA TCCAGGTGGC TGTGCCAAAT ATGAAATGTG GCCAGAGCCC CTGAGAAAAT
  GAGTTTCATT TTTATTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39062955	mCV23002642	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss61825835	NES17748938	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	G	G		A	G	G	A		A	A		A
ss149094375	ENSMUSSNP5417647	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss324366840	CHEV_13_60755259	CHEVERUD	SCREENING_POP	f	SNP												A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29245137					SNP	A	A	G	G	G	G	G	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61825835	NES17748938	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60801712 () rs orientation: forward

Symbol	Name	Function Class
Dapk1	death associated protein kinase 1	within coordinates
Rr273140	regulatory region 273140	89 bp proximal
Rr276884	regulatory region 276884	889 bp proximal
Rr284608	regulatory region 284608	within coordinates