rs29245991 SNP Detail

Summary

• ID
  rs29245991
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88968044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCCTGCACT TTAGGATTTG CCAGAATCCT TTGGAAGGGA TCCCTGAAAG ATAACTTGTC
  ATTTTCCAAG TTGGAGACGG TCTTTGGAAA ACACATATCA CAGCAGGAGT GCACATTCAG
  AGTTAAACTG AAGTGACATA CAAGGAAGCA GCATTGGTAA TTGACTAGAA TGGACTTACA
  ACTCTAAACA ATACTCTCCT TAACCAAAAG GGCTGGGTTT AAACAGAAAG TACTACAAGG
  AAGTGACTCT TCCTTTCCTT GACAAGACAA TTTTTTTCCT TTTTTTTTTT TTTTTGGTTG
  K
  TTTTTGTTGT TGTTATTTTA TTTCTTTACA TTTCAAATGT TATCTCCCTT CCCAGTTTCC
  TTCCTGAAAA CCCCATATTC GGTCCCCCAG CCCTTCTGGC TCCCCCACCC AACCACCCAC
  CAACTCCTGC CTCACCATTC TAGCATTCCC CTACACTGGG GGCATTGAGC TTTCACAGGA
  CCAAGGGCTT CTCCTCGCAT TGATACCTAA CAAGGCCCTT CTCTGCCACA TATATGGCTG
  GAGTCATGGG TCCCTCCATG TGTATTCTTT GGTTGATGGT TTAATCCCTG GGAGCTCTGG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss39065679	mCV22584362	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29245991					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88968044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	1284 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	1547 bp upstream
Rr483401	regulatory region 483401	1057 bp proximal
Rr483402	regulatory region 483402	1334 bp proximal
Tssr120562	transcription start site region 120562	1549 bp upstream
Tssr120563	transcription start site region 120563	1618 bp upstream
Tssr120564	transcription start site region 120564	1657 bp upstream
Tssr120565	transcription start site region 120565	1669 bp upstream
Tssr120566	transcription start site region 120566	1681 bp upstream
Tssr120567	transcription start site region 120567	1744 bp upstream
Tssr120568	transcription start site region 120568	1754 bp upstream
Tssr120569	transcription start site region 120569	1783 bp upstream
Tssr120570	transcription start site region 120570	1807 bp upstream
Tssr120571	transcription start site region 120571	1825 bp upstream
Tssr120572	transcription start site region 120572	1957 bp upstream
Tssr120573	transcription start site region 120573	1991 bp upstream
Tssr123374	transcription start site region 123374	1849 bp downstream