rs29246007 SNP Detail

Summary

• ID
  rs29246007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23945687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAG GTCACGTCAG AGATCCGACC
  Y
  GTACACTTTA CGCATATTCC ACGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39061086	mCV22702510	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss47383882	NES11347445	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		T	C	C	T		T	T	C	C		T
ss148808367	ENSMUSSNP3057567	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss324291503	CHEV_13_23853573	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29246007					SNP	C	C	C	C	C	T	C	T	T	C	C	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383882	NES11347445	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23945687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Cpgi5377	CpG island 5377	1814 bp proximal
Gm61378	predicted gene, 61378	within coordinates
Gm61381	predicted gene, 61381	887 bp downstream
H1f1	H1.1 linker histone, cluster member	1962 bp upstream
H3c1	H3 clustered histone 1	181 bp downstream
H4c1	H4 clustered histone 1	455 bp upstream
Rr388132	regulatory region 388132	within coordinates
Rr403665	regulatory region 403665	1734 bp upstream
Rr475945	regulatory region 475945	246 bp distal
Rr475946	regulatory region 475946	672 bp proximal
Rr475947	regulatory region 475947	1820 bp proximal
Tssr118865	transcription start site region 118865	1956 bp upstream
Tssr121749	transcription start site region 121749	516 bp upstream
Tssr121750	transcription start site region 121750	488 bp upstream
Tssr121751	transcription start site region 121751	468 bp upstream
Tssr121752	transcription start site region 121752	658 bp downstream
Tssr121753	transcription start site region 121753	674 bp downstream
Tssr121754	transcription start site region 121754	1798 bp downstream
Tssr121755	transcription start site region 121755	1815 bp downstream