rs29247917 SNP Detail

Summary

• ID
  rs29247917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83878320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGCTGCCAA GGGCTCCCCT AGCAGCCCCA GGGGAGGACA AGCCGCTGCC CCGTGGCAGT
  TGCCAGCCTT CCCACCACAT TCGCAGACTC TGGTTCTGCT CCTTCAGCCC CACTAAATAC
  AGGTTCTTTT TTTCTCTCCC GGGGAGGGTT GGGGAGAAAG AAAGAAAATA GAAAAGAAAA
  GAAACAAACA CACACCTAAA ACAACAAACC GAAAACAACA GATAACAAAA TCAACGAATC
  CCAAGCGTTT CAGAACAACG CTTGGGTCGC TTGTCCAGTA AAAAGATTGA CAATAGGACA
  W
  TATTCTTTTT TTTTTTTTTT CTTGTCTCCA CAAGAAGAGG AGAGGGAGCA AACAGACACC
  AGCAAAGCAT TCCTGTAACA CGATGTGCTA CACAAGTTCC CAGTAGCGAC AGGTAAATTG
  CCCAACCAAA TGGCGAGGGC TTCTCTTTTT GGTACCTGTT TACCTATGAA CAAATTATGT
  GTATCAGCTT CATTAACAGC AGTGCCAGGG GCGCAAAATT TTACTGTAGT GGGAGTGACG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA TGTGTGTGTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39064719	mCV24731981	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss144778527	ENSMUSSNP2563671	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29247917					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83878320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5906	CpG island 5906	221 bp distal
Cpgi5907	CpG island 5907	203 bp proximal
Gm55122	predicted gene, 55122	within coordinates
Mir9-2hg	Mir9-2 host gene	within coordinates
Rr483282	regulatory region 483282	711 bp distal
Rr483283	regulatory region 483283	607 bp distal
Rr483284	regulatory region 483284	within coordinates
Rr483285	regulatory region 483285	888 bp proximal
Rr483286	regulatory region 483286	939 bp proximal
Rr483287	regulatory region 483287	1520 bp proximal
Tssr120527	transcription start site region 120527	733 bp downstream
Tssr120528	transcription start site region 120528	707 bp downstream
Tssr120529	transcription start site region 120529	1177 bp upstream
Tssr123338	transcription start site region 123338	1066 bp upstream
Tssr123339	transcription start site region 123339	617 bp upstream
Tssr123340	transcription start site region 123340	521 bp upstream
Tssr123341	transcription start site region 123341	490 bp upstream