rs29248231 SNP Detail

Summary

• ID
  rs29248231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12475447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGGAATC ACATCATAGG
  ATTGCCCTGA GGATTGTACT AGTTTAAATA GCAGAAAACA GCTCTGTATG TGTTAGCTAT
  TATTGCTAGA AAACATTGCT CTTCTTCAAC CAGCCAAATT AAGTAAGTTG AGGGTGGGGT
  GGGGGTGGCA GAGTTACTCC GGGGAATACC AAATGCAATG TTTTGCATCA GCCCGGTTTT
  R
  AAAGATAAGA GCGCCCCCTC GGCACTGCGC CCTGCCCACT GAATCATTTA CTACCTCTAG
  TCCTGATGAC TCAAACCAGA ACCAAGCCAG AAAATGAAAC TAGAGTTTCC TGTCTTTTAC
  TTCCTACAGT TCCGCCAGGC TGTAGACAAT AGGCACTCGC CAAATCTCTT ATTTTACCGG
  AGAAAAGAAA ATTGCATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39066027	mCV22708145	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148681940	ENSMUSSNP4328119	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29248231					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12475447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	393 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	17 bp upstream
Rr369647	regulatory region 369647	583 bp upstream
Tssr118345	transcription start site region 118345	104 bp upstream
Tssr121451	transcription start site region 121451	1440 bp upstream
Tssr121452	transcription start site region 121452	1284 bp upstream
Tssr121453	transcription start site region 121453	533 bp downstream
Tssr121454	transcription start site region 121454	844 bp downstream
Tssr121455	transcription start site region 121455	866 bp downstream
Tssr121456	transcription start site region 121456	972 bp downstream
Tssr121457	transcription start site region 121457	996 bp downstream