rs29248626 SNP Detail

Summary

• ID
  rs29248626
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20818388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAACCTGA AGACACAAAT
  CCCCTATACT CACATGGTAA AAGGGAAGAA ATAACTCCTG CAAATGGTCT TCTCACCACC
  ACAGTCACAC TGTGGCACAC ATGAACTCTA CACAAATGTA CGCGCGCACA CACACACAAT
  GTGAAAATAA ATAAATGGAG AAACTTTTAA AATAAGTCAA TATTTAGGTG CAGAAGATTT
  S
  AAGAAGATAA AAAAGTAAGC CATGCGGATT TGTGGAGGAA GGCATTTTCT TAAAGGGCAA
  GCCCACTCTA ATGTCCTCTT GGTAGTTGTT CCTGTCATGT CCAAGGTCAA GCAAGTAGTT
  TGGAGTTTAG AGGTGGGGCA ACATAATCTT CTCATTGAAA ACCCAATTAG AGGACAACTT
  GCTGGCCTTC CTTCAGGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39067042	mCV25329614	ABI	CRAMUS_MOUSE	f	SNP	C	C	G						G
ss61757506	NES17681596	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss148772267	ENSMUSSNP2711728	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29248626					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757506	NES17681596	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20818388 () rs orientation: forward

Symbol	Name	Function Class
Rr275299	regulatory region 275299	1213 bp proximal