rs29248629 SNP Detail

Summary

• ID
  rs29248629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88970518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG GGTTGTGAGG TTGTGATAGA
  R
  ACCTGACAGA GCTAAGTGTG CTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39067045	mCV22584374	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss61911667	NES17093082	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	A		G	A	A	A		G	A	A	G		G
ss144874028	ENSMUSSNP743443	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss324471567	CHEV_13_88962004	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29248629					SNP	G	G	G	A	G	A	A	G	G	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61911667	NES17093082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88970518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	117 bp distal
Cpgi5920	CpG island 5920	1239 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	within coordinates
Gm38504	predicted gene, 38504	1785 bp upstream
Rr483401	regulatory region 483401	747 bp distal
Rr483402	regulatory region 483402	1119 bp distal
Tssr120562	transcription start site region 120562	879 bp downstream
Tssr120563	transcription start site region 120563	819 bp downstream
Tssr120564	transcription start site region 120564	808 bp downstream
Tssr120565	transcription start site region 120565	796 bp downstream
Tssr120566	transcription start site region 120566	776 bp downstream
Tssr120567	transcription start site region 120567	723 bp downstream
Tssr120568	transcription start site region 120568	715 bp downstream
Tssr120569	transcription start site region 120569	680 bp downstream
Tssr120570	transcription start site region 120570	660 bp downstream
Tssr120571	transcription start site region 120571	638 bp downstream
Tssr120572	transcription start site region 120572	485 bp downstream
Tssr120573	transcription start site region 120573	457 bp downstream
Tssr120574	transcription start site region 120574	423 bp downstream
Tssr120575	transcription start site region 120575	1192 bp upstream
Tssr120576	transcription start site region 120576	1815 bp upstream
Tssr123374	transcription start site region 123374	604 bp upstream