rs29248937 SNP Detail

Summary

• ID
  rs29248937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60803607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCCTTC CCTCCTCCCC
  CTCTTTCTTT TCCTTCCTCC CTCTCTCCCT CCTTCCTCTC CCTTCCCCCC CCTCCTTCCC
  TCCCTCCCTC CCTCGTTGGC ATTGTGGCTC TTAACCCTGG AAGCCCAGGC TCCTCTGGGT
  TTCAGCCGAG CCTTAGGATG TCACTAAGAA TCCCAGCACC TCACCATGCC TCAGCATGAG
  Y
  CAGGAAAGAG ACGTGGACAC ACATTGGGCA AAAGGCACAT TCCTGTCCCT TTGGCCACCT
  CAGGTCACCA GCGGGTCTGT CAGGCAGGGT TGCAGGGCAC CCTCAGGGCT ACCCAGAGAG
  TGAATTTGGT CTCATTGGTA ACAACTTACA AGAACTAACT CAAGGTCCTA CAAGACTTAT
  TTTATCATCT GTCCCTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39067365	mCV25282108	ABI	CRAMUS_MOUSE	f	SNP		T					C	C
ss61825832	NES17748903	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C		C	C	T		T	T		T
ss324366852	CHEV_13_60757154	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29248937					SNP	T	T	C	C	C	C	C	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61825832	NES17748903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60803607 () rs orientation: forward

Symbol	Name	Function Class
Dapk1	death associated protein kinase 1	within coordinates
Rr273140	regulatory region 273140	1407 bp distal
Rr276884	regulatory region 276884	within coordinates
Rr284608	regulatory region 284608	1171 bp distal