rs29249606 SNP Detail

Summary

• ID
  rs29249606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69663551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG CCACTTGCAA TTTCTAATGA
  Y
  GCAAACATGT TCCATGCTGT GAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39070122	mCV25122452	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss52650321	NES15460447	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T		C	T	C		T
ss144563470	ENSMUSSNP2562482	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324404671	CHEV_13_69654310	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29249606					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52650321	NES15460447	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69663551 () rs orientation: forward

Symbol	Name	Function Class
Gm48676	predicted gene, 48676	1256 bp downstream
Rr273498	regulatory region 273498	850 bp proximal
Rr277031	regulatory region 277031	351 bp distal
Tent4a	terminal nucleotidyltransferase 4A	within coordinates