rs29249952 SNP Detail

Summary

• ID
  rs29249952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36918946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCGCCC CCTCCCTGCG
  CAGAATCGGG GCTCCCTCTC CTCTCCCCGC CCCGGAGACG GGGAGTCCTG GTGCGCCCAC
  TCGATTGTTC AACCTGCTCC CTCCTTCACT GGCGCCACAA CGAACCCAGA CACTTCCAAC
  CCTGCAGAGA GGTTTGGGGA GCTTTGGGCC CAGGGAGGAC AGAGGGGAGA GACTCCTCCG
  R
  TCCGAATCAC CCTTCTCTCG CCCTCAGTGG GGTGCAGACC CCCTCACTTG CCTACCCTAG
  TTTTCTCTCC AGCCCCACAG TTGAGCTCTA GGCGCAGCCT AGAGCGCGTG AGCACATAAC
  CCGGCCCCCC AGCACACGCA CACACTCACA AAAGCGCACG CCCGGGAGCG CCCCCGAGCT
  CGCCCGCACA CTCCGCACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39067089	mCV24792176	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G
ss61769735	NES17697836	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	G	A	A	G	G	A	A
ss148879331	ENSMUSSNP3523240	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29249952					SNP	G	G	A	A	A	A	A	G	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61769735	NES17697836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36918946 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5451	CpG island 5451	within coordinates
Cpgi5452	CpG island 5452	943 bp proximal
Gm56572	predicted gene, 56572	within coordinates
Nrn1	neuritin 1	Intron
Rr477394	regulatory region 477394	506 bp distal
Rr477395	regulatory region 477395	74 bp distal
Rr477396	regulatory region 477396	within coordinates
Tssr119271	transcription start site region 119271	105 bp downstream
Tssr122097	transcription start site region 122097	697 bp upstream
Tssr122098	transcription start site region 122098	664 bp upstream
Tssr122099	transcription start site region 122099	587 bp upstream
Tssr122100	transcription start site region 122100	557 bp upstream
Tssr122101	transcription start site region 122101	525 bp upstream
Tssr122102	transcription start site region 122102	480 bp upstream