rs29250761 SNP Detail

Summary

• ID
  rs29250761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45544340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTTCTGCAG GCAGCCTCCT TCTTGAGGGG TCTTTACACG TGTGTTTTCT TAAGGGTGAC
  TAAGGCTCCT AACGGGGTGT GCCTAATGGA TATTGGCAGG CCCATTTGAC CCCTTGAAAT
  ACTGTGTCTA CGAGACCTGT GGACCTGAGC TGTTTGGAAA GGCGCTTGTA AAGCTTAGCT
  GACACTTGTA GCATGCTTCC TCAATGCGTT TGTGTTTTTG GAATCCAGAT GGTTAAAACT
  GTCCAGATAA TACGCTGCCA AATCAGCTGT GCAGATGGTG CTGCGGGGCG GAGGGGGGGG
  Y
  GGCGGGGGGA ATTCCAGCGA TTGGAATAAG AAATAAAACA CCCTGTGTGT TCTTCTACCT
  CAGCCTTTTG GGAAGTCTGT TTTGGGGGGA CCCCTTTCCC TGTGCCATTG GTCAGACCCT
  AGAAATAGTC AAGCAAGGCC AAGCCTCCAC TGGAGGGCTG CGTTTTGGCT TTGCTGTTTC
  CTTAAAACCT TGTTTTTCCG GTCGGTCTAC CAACTGGCAT TGCAAGAAGG TAGAACTTTG
  GGAAAGCAGG GGCCAGTCCT CTCCTCGGAT GGAGCCCTTA GGTTTGCACT GCTCACACCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39066610	mCV22908445	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29250761					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45544340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	294 bp distal
Gm56579	predicted gene, 56579	947 bp upstream
Mylip	myosin regulatory light chain interacting protein	within coordinates
Rr403746	regulatory region 403746	1125 bp downstream
Rr478673	regulatory region 478673	1112 bp distal
Rr478674	regulatory region 478674	1331 bp distal
Rr478675	regulatory region 478675	within coordinates
Rr478676	regulatory region 478676	457 bp proximal
Rr478677	regulatory region 478677	958 bp proximal
Tssr119571	transcription start site region 119571	1114 bp downstream
Tssr119572	transcription start site region 119572	900 bp upstream
Tssr119573	transcription start site region 119573	916 bp upstream