rs29251008 SNP Detail

Summary

• ID
  rs29251008
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46118927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG GTGACCGATC GGTGCTCGCG
  M
  GCCTCCCCGG CTCCCTGCAA CCTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39069165	mCV22824120	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss148968813	ENSMUSSNP843596	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss324332929	CHEV_13_46060820	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29251008					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46118927 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	within coordinates
Atxn1	ataxin 1	460 bp upstream
Cpgi5536	CpG island 5536	within coordinates
Gm56575	predicted gene, 56575	within coordinates
Rr403752	regulatory region 403752	251 bp downstream
Rr478835	regulatory region 478835	148 bp distal
Rr478836	regulatory region 478836	within coordinates
Rr478837	regulatory region 478837	770 bp proximal
Rr478838	regulatory region 478838	835 bp proximal
Rr478839	regulatory region 478839	1300 bp proximal
Tssr119584	transcription start site region 119584	220 bp downstream
Tssr119585	transcription start site region 119585	4 bp upstream
Tssr122339	transcription start site region 122339	1732 bp upstream
Tssr122340	transcription start site region 122340	450 bp upstream
Tssr122341	transcription start site region 122341	828 bp downstream