rs29251277 SNP Detail

Summary

• ID
  rs29251277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:117386173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCAACAC CTTAACCAGT
  CAGTACAGGT TTGTATAGAA GTGTACAGAC CGCCAGCCAC CGCCGGTTTA ACTACACGTT
  TTGCTATTCA CTAAACATTT TTTTCCTTCT GCAATCATTT AAATGTTCTG CTAATATTCT
  AATTTTCAGA ATTTCTAATT TTACAGAATT ATTTCTGTTT TAAAATTTTG ATCGATGGCT
  R
  TCTTCATTTT TTATTAAGTA TTCTGGGAAA TAAGCTTGTA TTAATAACTC TAATTATCTC
  TAGGTTCATC GTTTTTAATA GCAAACAATT GGGAAAATAT TCTTGTGTCT TTGGAGAAAA
  GGAACTAAGA GGGACCTTTA ACATCCACGG TCAGTATTTA TAACTTCAGC ATTATGTTCT
  TCGATTTCTC ATGTCCCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39069757	mCV24416721	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		G
ss49147117	NES12469787	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	G		A	G	G	A		G
ss145405726	ENSMUSSNP7052181	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss324543516	CHEV_13_118038444	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29251277					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49147117	NES12469787	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117386173 () rs orientation: forward

Symbol	Name	Function Class
Emb	embigin	within coordinates
Rr270627	regulatory region 270627	573 bp distal
Tssr121224	transcription start site region 121224	191 bp downstream
Tssr121225	transcription start site region 121225	61 bp upstream
Tssr121226	transcription start site region 121226	949 bp upstream