rs29252112 SNP Detail

Summary

• ID
  rs29252112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGC GCCCCGGTGT ACCTGGCGGC
  Y
  GTGCTGGAGT ACCTGACGGC CGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39069692	mCV22702826	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29252112					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	208 bp proximal
Gm54518	predicted gene, 54518	84 bp downstream
H2ac4	H2A clustered histone 4	Coding-Synonymous
H3c2	H3 clustered histone 2	1051 bp upstream
Rr403663	regulatory region 403663	154 bp downstream
Rr403664	regulatory region 403664	791 bp upstream
Rr475938	regulatory region 475938	158 bp distal
Rr475939	regulatory region 475939	78 bp proximal
Rr475940	regulatory region 475940	315 bp proximal
Rr475941	regulatory region 475941	483 bp proximal
Tssr118860	transcription start site region 118860	208 bp downstream
Tssr118861	transcription start site region 118861	176 bp downstream
Tssr118862	transcription start site region 118862	87 bp downstream
Tssr118863	transcription start site region 118863	1047 bp upstream
Tssr121747	transcription start site region 121747	901 bp downstream