rs29253901 SNP Detail

Summary

• ID
  rs29253901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139392167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGTCAT TCCATACTGT
  TTACTATGAC TGCTGTAAAT GATAAAACAT TGTGTGGAGG ACCTGATAAG AGTCCTCTTC
  CCAAGTAAGT GTTAGTTCCC TTCCGTCCTC TCCACTCAGG AACAATGGGG AATCGACATC
  AATGGTAACT GTGTTCCAGA GGTTGGCAGA AGATGGGCGG AAACTTGTAT GGAAGAATGA
  K
  TGTATCTTGG CGTCCTTATC AGGTCCTCTG AGCTTTGATA GGGTCAGCTA CCCTTGCCTT
  CCTCCAGCTC CTATTCAGGC TTTAGTGGAT CAGAATAGGC TCCTGATAGG AAAAGCATGT
  CCTTCCGAAT AGATTGGGGC CTGCATTGCT CTTGAAATTG AACATTCAAC TTTCATCTTG
  GTTTGCTGAA AAGAAATGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38448123	NES09766482	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29253901					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448123	NES09766482	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139392167 () rs orientation: forward

Symbol	Name	Function Class
Rr3067	regulatory region 3067	234 bp proximal
Rr6758	regulatory region 6758	1990 bp distal
Rr9245	regulatory region 9245	within coordinates