rs29253902 SNP Detail

Summary

• ID
  rs29253902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139392145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGCTAG AGTCCATGGA
  GGATTTTGTC ATTCCATACT GTTTACTATG ACTGCTGTAA ATGATAAAAC ATTGTGTGGA
  GGACCTGATA AGAGTCCTCT TCCCAAGTAA GTGTTAGTTC CCTTCCGTCC TCTCCACTCA
  GGAACAATGG GGAATCGACA TCAATGGTAA CTGTGTTCCA GAGGTTGGCA GAAGATGGGC
  R
  GAAACTTGTA TGGAAGAATG AGTGTATCTT GGCGTCCTTA TCAGGTCCTC TGAGCTTTGA
  TAGGGTCAGC TACCCTTGCC TTCCTCCAGC TCCTATTCAG GCTTTAGTGG ATCAGAATAG
  GCTCCTGATA GGAAAAGCAT GTCCTTCCGA ATAGATTGGG GCCTGCATTG CTCTTGAAAT
  TGAACATTCA ACTTTCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38448124	NES09766479	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29253902					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448124	NES09766479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139392145 () rs orientation: forward

Symbol	Name	Function Class
Rr3067	regulatory region 3067	256 bp proximal
Rr6758	regulatory region 6758	1968 bp distal
Rr9245	regulatory region 9245	within coordinates