rs29253903 SNP Detail

Summary

• ID
  rs29253903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139391883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTTAGA TAAGAGCTCC
  CACTAAGAAA CATCAGTAAG AAATGATATA AGAATGACAA ATAAACATTA CAAACATGTT
  AAACACCAGT AGACACATGT TAAAAACATG ACACGGGCAG GCAAGCAGGA TGGGATAGTT
  CAGCAGGTAA AAGTATTAGC TATGCAAGTC CAGGTTCAAG ATCGGAAACC CAAGGTGGGA
  R
  AAGAGGACCT TTCAAAGGTT GTAAGGGTTA AATGCAACTA AGGTGAAGCA CCTAGTATGG
  AAGCAGGCTA GAGTCCATGG AGGATTTTGT CATTCCATAC TGTTTACTAT GACTGCTGTA
  AATGATAAAA CATTGTGTGG AGGACCTGAT AAGAGTCCTC TTCCCAAGTA AGTGTTAGTT
  CCCTTCCGTC CTCTCCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38448125	NES09766478	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29253903					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448125	NES09766478	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139391883 () rs orientation: forward

Symbol	Name	Function Class
Rr3067	regulatory region 3067	518 bp proximal
Rr6758	regulatory region 6758	1706 bp distal
Rr9245	regulatory region 9245	119 bp proximal