rs29254031 SNP Detail

Summary

• ID
  rs29254031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139423311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAGTTC TTTTGAAGGT
  CCACACAAAG CCACAAGGGC CTCTTGGAAC TCTCAATCCG AGGAAATGAT TAACTATCCT
  CATTTCTGCA GAACGATGCA ATCTGTTTAT GAAATGTCTA AATTAATGGG GAGGATCCAG
  TGCAGTTGGG GGTTTTCCAC CATCATCCAG CCGAGGCTCC TGGTCAGGGA AATTTGAGCC
  Y
  GGGGCTCACT TGGCTTCCTC ACCACTTCCT GCTCCCAAGC CTCCTCCAAC AGTGTGCCTT
  TAATAAGTCC AGGTTGTTTC CAGTTCGCAG CGTTAGTTAA CCCTTTGAAG TCTGGGTAGG
  CATATCACGG TTCAAACTCG CAAACCATTT AATATACATC AAAGATTGGC CAGCAGCGCA
  AGTGTCCCTA TGTAGATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss38448023	NES09765252	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs29254031					SNP	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448023	NES09765252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139423311 () rs orientation: forward

Symbol	Name	Function Class
Gm39538	predicted gene, 39538	within coordinates
Gm61754	predicted gene, 61754	within coordinates
Rr3071	regulatory region 3071	311 bp distal