rs29254222 SNP Detail

Summary

• ID
  rs29254222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139151575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGGG GTTGTCACCA
  CTGTATATTC CCAATAATTA TATAGTGTTT TCATAATGAG GAAAATTTTT ATTGCAAACA
  AAAATTTAGT AAGGCCTTGT AGGATACTCC TATAAACTCA GTACTTGAGG CACAGAAGCA
  CGGGGAGAGG AGGTTAAAGT CAGCCTTAGC TGCACAGCGA AGCCCTGTTT CAGAAAATTA
  R
  AGTGGCTTTC TGCTTATTTT CTTGTTTCAA ATTGAGGCCA GCTATCATAC CCTTATTACA
  TCTAATACAC AAAAGCATCT TCTACTTAAT GGACTCTCGA TGGTTTGGAC CACTTCCATG
  GCTGCCCATC CCATACTCTC AACAATGCTG CAGAGTTTGG TAGGGCAGGG ATAAGTGGAA
  TCATGAATAA AGTCTGAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss38448934	NES09774861	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs29254222					SNP	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448934	NES09774861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139151575 () rs orientation: forward

Symbol	Name	Function Class
Gm15046	predicted gene 15046	within coordinates
Rr3049	regulatory region 3049	1175 bp distal