rs29254424 SNP Detail

Summary

• ID
  rs29254424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139391814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATACTAAA GTGATACCCC
  ATCCCCTGCT TCCCTTACTA AAACTGTCAG AAAAAGCCAG CTAAAACTCA AGACTTAGAT
  AAGAGCTCCC ACTAAGAAAC ATCAGTAAGA AATGATATAA GAATGACAAA TAAACATTAC
  AAACATGTTA AACACCAGTA GACACATGTT AAAAACATGA CACGGGCAGG CAAGCAGGAT
  R
  GGATAGTTCA GCAGGTAAAA GTATTAGCTA TGCAAGTCCA GGTTCAAGAT CGGAAACCCA
  AGGTGGGAAA AGAGGACCTT TCAAAGGTTG TAAGGGTTAA ATGCAACTAA GGTGAAGCAC
  CTAGTATGGA AGCAGGCTAG AGTCCATGGA GGATTTTGTC ATTCCATACT GTTTACTATG
  ACTGCTGTAA ATGATAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38448126	NES09766476	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29254424					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448126	NES09766476	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139391814 () rs orientation: forward

Symbol	Name	Function Class
Rr3067	regulatory region 3067	587 bp proximal
Rr6758	regulatory region 6758	1637 bp distal
Rr9245	regulatory region 9245	188 bp proximal