rs29254497 SNP Detail

Summary

• ID
  rs29254497
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139421784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCAAGTG GGCATTACTA
  CCAACTTACA GGATGCCAGC CAAACTGGCC TCTCCCCAAC CTAGACTCCA CCTCTCCGGG
  CCTGGCCGCA CTGCCTTGCC CATCTGCCTT TCCAGAACAG CTGCTTGCTG GGGAGGAGAA
  ACGAGGTGCA CTGCAGATGG CGAGGAATCT TTCTTACCGT TCTCCATTTA AAAATTGTGA
  R
  GTCGATGCTT TCTGAAGTCA CTTTTAGGTG TGGCATGCTA ATAGTCTATG CAACCAAGAT
  CAGGCTAAAA ACTTTAGGGT TTTTTGTTTG TTTGTTTTTG TTTTTGTTTT TTGTCTGGGG
  GCGAGGATTG TCCTGGTGGA GAATCAAACT CAGGGCCTTG GACACCTAGA CTTCTCTATT
  CCACATCTTA CTTTTAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38448029	NES09765310	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29254497					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448029	NES09765310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139421784 () rs orientation: forward

Symbol	Name	Function Class
Gm39538	predicted gene, 39538	530 bp downstream
Gm61754	predicted gene, 61754	within coordinates
Rr3071	regulatory region 3071	1017 bp proximal