rs29254502 SNP Detail

Summary

• ID
  rs29254502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139421617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCAAGGA AGATGAACAC
  TGCGCCTCTC CTGATGCAAG GGGGGGGGGG GAGTGTTATT CAGGGGAAGA CCGGGCTGCA
  GAGAAATTAG GGGGAAAAGT CACCAAAGGG GTTTCCACCA AGGTTTAGAT CTTAAGAATA
  TTTCTCTCAC GAGGCTTGGA CGCTTTGCCC TCAAGTGGGC ATTACTACCA ACTTACAGGA
  Y
  GCCAGCCAAA CTGGCCTCTC CCCAACCTAG ACTCCACCTC TCCGGGCCTG GCCGCACTGC
  CTTGCCCATC TGCCTTTCCA GAACAGCTGC TTGCTGGGGA GGAGAAACGA GGTGCACTGC
  AGATGGCGAG GAATCTTTCT TACCGTTCTC CATTTAAAAA TTGTGAAGTC GATGCTTTCT
  GAAGTCACTT TTAGGTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38448034	NES09765305	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29254502					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448034	NES09765305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139421617 () rs orientation: forward

Symbol	Name	Function Class
Gm39538	predicted gene, 39538	697 bp downstream
Gm61754	predicted gene, 61754	80 bp upstream
Rr3071	regulatory region 3071	1184 bp proximal