rs29254727 SNP Detail

Summary

• ID
  rs29254727
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139150639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTCATACA TTCATTTGTT CCTGATGATG AAACTGATCA
  CCTTGGGATA GATGAATACA GCCATGGGTA TGCATGAGCT TGATCTGTTT GCCAGTATGG
  M
  GACCATCTTA TGATAAAGCT TTCATGAATA CATTGCATTG CAAAAGCAAG AACTGCATAT
  AAATTGACCT TTTATCATCT TAAAGGGTCT TCCCTGAGGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38448939	NES09774950	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29254727					SNP	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448939	NES09774950	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139150639 () rs orientation: forward

Symbol	Name	Function Class
Gm15046	predicted gene 15046	within coordinates
Rr3049	regulatory region 3049	239 bp distal