rs29254935 SNP Detail

Summary

• ID
  rs29254935
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139421026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATGTGG AGTTCTGGAA
  GCAGAGATGC CCAGATAGGG AAGGAAAAGA GACTTTGAAG AACATATACC AATGTTCTTC
  AAAGTGCTTT GTCCTTCCAC AGGGTAGGGG TGCAGTAAAG CCAGCCAGCA CCAGCCCTGA
  GTTACATCCC AACCCTGTTT AGTCTGGCGG TTGCTCAGAC AGGAGCTGCG TTCTTAAGGG
  M
  GGGCCAGTTC CTTCCTGCCT GGGGAGTCTA ACGAAGTGCT GAGCTGGGCA GAACTCCCAG
  TGCTCCCTGG GTCCCAAAGC AAGCAAACAG AAACCTCATG CAGGGCCACG TGAGGTCAGG
  TGGGGCGGGG CACGGAAGCC TGAGCTGTGA ACGGATTGGC TACTGTTTGA CACACCACTT
  TGAGAGCCCG CCGGCCATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38448037	NES09765302	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29254935					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38448037	NES09765302	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139421026 () rs orientation: forward

Symbol	Name	Function Class
Gm39538	predicted gene, 39538	1288 bp downstream
Gm61754	predicted gene, 61754	671 bp upstream
Rr3071	regulatory region 3071	1775 bp proximal