rs29257412 SNP Detail

Summary

• ID
  rs29257412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139809524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCATTTAA ATACTGTCAT
  GTGGTTAATA GAAAAAAATT AAATATCTAT TATGAAATCC TTAAACAAAG ATGTTATATG
  GAGTCAAAAG TCGCCAGAAA GAACTATTAA ATTTATCCCA TGATCTATTC TGGCCATATA
  GTGGAAAATG TGTTAGTTAC TTGATCTTAG AGTTTTGTTT CTACTTAATA GATGAGGAAA
  R
  TCTCTGTCAT TCTCTTCAGT TGTTAGCTAG TTGGGTCAAA CACTGAGTTT TATGCACCAA
  CCCTCTGGGA GCACACCTTT AGTCAACATA ATTCTTTCTG TAAAGCTGTA CCCTGTTCTA
  TATTAGACAC AGGATCATAA CAAGTACATG AACGACTTTT ATTACAAATA AATATACATT
  TATATAACTT TACTGATGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38447294	NES09753223	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29257412					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38447294	NES09753223	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139809524 () rs orientation: forward

Symbol	Name	Function Class
Rr6771	regulatory region 6771	959 bp distal
Rr9256	regulatory region 9256	within coordinates
Tssr162212	transcription start site region 162212	1242 bp downstream
Tssr162213	transcription start site region 162213	1218 bp downstream
Tssr162214	transcription start site region 162214	1140 bp downstream
Vsig1	V-set and immunoglobulin domain containing 1	within coordinates