rs29257926 SNP Detail

Summary

• ID
  rs29257926
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139808838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCATTCTG CAGCCAAATT
  ATTTTACAGA CCTTGTGAAA TGTTTCCCAT TTTCTTTAGT TTGAGAGGTG AACAAGCAAT
  TTTACCCAGA AAGCAAAGTT TGCACTTTAA AGATAAAATT TCTGTTTTAG TTCCGTGTTT
  CCCCTAAGCT CACTATGTTT GAGTCATTTT GCCAGGGCAA GAAAAGCCTC AAGACCGCAT
  S
  AACATATGTG TGGGGACACT AGAGAAAGAC TCACTGATCG AATAGTCAAA CCATAATATG
  GATAATATAG ATGAGTTTAG GGATTTGAGC AGAACAACAC CATTTTTAGA GACCCACACC
  CCAGTGTTTG TTACACTCAA GAGAGGCCCA ATTGGTTTGG AAAGTCCCTT GGCTGGGGTT
  TTAAAACTAA TTTTGAATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38447298	NES09753219	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29257926					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38447298	NES09753219	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139808838 () rs orientation: forward

Symbol	Name	Function Class
Tssr162212	transcription start site region 162212	556 bp downstream
Tssr162213	transcription start site region 162213	532 bp downstream
Tssr162214	transcription start site region 162214	454 bp downstream
Vsig1	V-set and immunoglobulin domain containing 1	within coordinates