rs29257927 SNP Detail

Summary

• ID
  rs29257927
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139808771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTAAATA TGCTGTCTAT
  TTTCAGAACT CTTGTTTAAT AAATGTGTTC GGTGTTGATG ATTGGGAGGT CATTCTGCAG
  CCAAATTATT TTACAGACCT TGTGAAATGT TTCCCATTTT CTTTAGTTTG AGAGGTGAAC
  AAGCAATTTT ACCCAGAAAG CAAAGTTTGC ACTTTAAAGA TAAAATTTCT GTTTTAGTTC
  M
  GTGTTTCCCC TAAGCTCACT ATGTTTGAGT CATTTTGCCA GGGCAAGAAA AGCCTCAAGA
  CCGCATGAAC ATATGTGTGG GGACACTAGA GAAAGACTCA CTGATCGAAT AGTCAAACCA
  TAATATGGAT AATATAGATG AGTTTAGGGA TTTGAGCAGA ACAACACCAT TTTTAGAGAC
  CCACACCCCA GTGTTTGTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38447299	NES09753218	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29257927					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38447299	NES09753218	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139808771 () rs orientation: forward

Symbol	Name	Function Class
Rr6771	regulatory region 6771	206 bp distal
Rr9256	regulatory region 9256	230 bp proximal
Tssr162212	transcription start site region 162212	489 bp downstream
Tssr162213	transcription start site region 162213	465 bp downstream
Tssr162214	transcription start site region 162214	387 bp downstream
Vsig1	V-set and immunoglobulin domain containing 1	within coordinates