rs29257929 SNP Detail

Summary

• ID
  rs29257929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:139807302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCTGTTT ACCATCATTC
  TTTATGGCAT GATACTCAGA ATTAAGCTGG TTTTCAAGTA AGGTCTGTAC AGGACAGAGA
  CTGTGACTCA TTGTTTTGTT TCTGTAAGAC TATGAGTTAT TTGGTATATT TTGAGACACA
  CTATTTCTTA AGTTAGGACT TTCCTGTATA AGAATTGATC TTTCTCCCTG AAGAGGCTCA
  Y
  TCTCCCTAGA AGAGGTCACA GTTGCTGGAT TTAGGCGAGA CTCAGTTAAT AATAGGAAAC
  TATGGGGGAG CAATCTAGTA TCATCCGCCC AATACCATTT GCCTGCAAGC AAAATGTGAA
  TTTATGACAG GGGTATCCTA GGGAGGACTG ACGTGTACAT TTACAAAGTC TGAGAATATG
  CTCAGACATA AAGATGACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38447301	NES09753216	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss134476939	ENSMUSSNP3099654	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29257929					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38447301	NES09753216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:139807302 () rs orientation: forward

Symbol	Name	Function Class
Tssr162212	transcription start site region 162212	958 bp upstream
Tssr162213	transcription start site region 162213	1001 bp upstream
Tssr162214	transcription start site region 162214	1049 bp upstream
Vsig1	V-set and immunoglobulin domain containing 1	1055 bp upstream