rs29258691 SNP Detail

Summary

• ID
  rs29258691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:138111936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATTACA ATAAACAGAA
  TAAATGGTAC ATCTAATAAG AAACGATGCC TCATATTAAA GAACATCTAA GACAGTGCCC
  GATGTATTTC CTTGCTTCAC TGAGCATGCA GTACCTACAT TGGCCTAAAC TAACTGAAGA
  GAGAACTTAA AACCACAGTG GGAAAAGCTA CTCGGGAACT ATCTATGAGG ATTGAATAAA
  Y
  GTAATTTCAA GAAGTGCATT AAAGTGTTCA TGTGACGAAA GAATACAATG AAAAGTAGTA
  AACAACACAG GCAGAGCGTA CTGAAGACGC AGGGTTTTGT TATAGGCGCT AAGGACTTTG
  GCACTCAGAT ATAAAAATGG AGGTGACAGG GAATAATTCG TTTTGTTACA GGTGCTTGAG
  CAGCTGCCCA CATGCATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38451623	NES09767911	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29258691					SNP	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38451623	NES09767911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:138111936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22962	CpG island 22962	893 bp distal
Pwwp3b	PWWP domain containing 3B	within coordinates
Rr693875	regulatory region 693875	1133 bp distal
Rr693876	regulatory region 693876	877 bp distal
Tssr162142	transcription start site region 162142	1141 bp downstream