rs29258693 SNP Detail

Summary

• ID
  rs29258693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:138111821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGGGG TGGGCTGGAT
  GATCAGCAGT TAAAAGCCAG CTTCCGATAC TTAGTCCAGG CTACACTAGG CCTTGTCTTA
  AAACCAAACC CTGAGAGGTC ATAAAAGCAA TAAATATTCA TTACAATAAA CAGAATAAAT
  GGTACATCTA ATAAGAAACG ATGCCTCATA TTAAAGAACA TCTAAGACAG TGCCCGATGT
  R
  TTTCCTTGCT TCACTGAGCA TGCAGTACCT ACATTGGCCT AAACTAACTG AAGAGAGAAC
  TTAAAACCAC AGTGGGAAAA GCTACTCGGG AACTATCTAT GAGGATTGAA TAAATGTAAT
  TTCAAGAAGT GCATTAAAGT GTTCATGTGA CGAAAGAATA CAATGAAAAG TAGTAAACAA
  CACAGGCAGA GCGTACTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38451625	NES09767909	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29258693					SNP	A	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38451625	NES09767909	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:138111821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22962	CpG island 22962	778 bp distal
Pwwp3b	PWWP domain containing 3B	within coordinates
Rr693875	regulatory region 693875	1018 bp distal
Rr693876	regulatory region 693876	762 bp distal
Tssr162142	transcription start site region 162142	1026 bp downstream