rs29258837 SNP Detail

Summary

• ID
  rs29258837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:138110807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCATGAG CTGGGCATTG
  ATTTTGTACT TTTTTTCCCC CCTGAGCATC AGGAGCCCTC CTGTCCTCCA CCCCCTCCCA
  CCCAAAAAGG GGCGGAGCAT CCGGGGCGGA GGGGAAGGCG GGAACGCACG AGGTGGGCGG
  GGCGGAGCTG CTCTTATACT GGCTCGCGGA GGTCCGCGGG CCACTCGCTC GCGGCTCGCA
  Y
  CCAACTGACT GTTGCTTCGT GAGGGAGAGA CTGCCTAAGG GAGAGCCTCT CTGGTGGCCG
  AGGGGCGGCG GCGGCGGCGG CAGCGGCGGC CGCGACAGGC GCCAGAGGCT GCGTCTTCAG
  GCCTGTCCGG GAGAATTGTT GCAGAATTCG GTGTGAAAGG TGAGAAAAGT CGGGGCTGCG
  GGGTGAAAGT AAGGAAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38451629	NES09767928	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29258837					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38451629	NES09767928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:138110807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22962	CpG island 22962	within coordinates
Pwwp3b	PWWP domain containing 3B	within coordinates
Rr3016	regulatory region 3016	407 bp distal
Rr5442	regulatory region 5442	1994 bp proximal
Rr8303	regulatory region 8303	within coordinates
Tssr162142	transcription start site region 162142	12 bp downstream