rs29258839 SNP Detail

Summary

• ID
  rs29258839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:138110095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCTACAA AAAAAAAAAA AAAAAAAAAA AAAACAAGGA
  ACAGGCAAAA CCCCTCTGAG GGATGTTTTA ACTACATCAT TATTATACGG CAGCCTCTTT
  W
  TCTTTTCTTT GCCTTCAGAA GTCACTCATC TAAGTGGATG CTCACAGTCA TCTATAAAAT
  GGAACACACT GCCCCCAATG GAGGAACTAG AGAAAGTACC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss38451631	NES09767937	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs29258839					SNP	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38451631	NES09767937	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:138110095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22962	CpG island 22962	519 bp proximal
Pwwp3b	PWWP domain containing 3B	696 bp upstream
Rr3016	regulatory region 3016	within coordinates
Rr8303	regulatory region 8303	505 bp proximal
Tssr162142	transcription start site region 162142	685 bp upstream