rs29258840 SNP Detail

Summary

• ID
  rs29258840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:138109777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGACCAC AGCTTCCTCT
  CTCCCAAGTC CTCCCAGATC CTCCCCACCT CCCACCCACC CAACTCCAGG CCCTTTCTCT
  CTCAGTCCCT TTAGAGAGAA AAAAAGGCCT TCACCCTAAC TGACTAGTTT ACTGTTGATG
  CATATATTTC TTTCTAATTT CAGTATAATC GGACATGGAT GGATTTTCTT TAGAAATTAC
  R
  TTATTAGGTG ACGCAGTCAA GTCACCTGTA ACCGCACTGG CAAGACAGGG GCAGGGAGAG
  AGTGAATTTA AGGTCAGTCT ATACAGCATG GAGGATCTCA AACTCACAAA AGAAAAAAAA
  AATGAGAGAT GGAGAGAGGG AAGGAGGAAG GAAGGGGAGG GAGGGAGAAG GGAAGGAGAA
  ACAAGTAGAA AAGATGACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss38451632	NES09767973	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs29258840					SNP	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38451632	NES09767973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:138109777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22962	CpG island 22962	837 bp proximal
Pwwp3b	PWWP domain containing 3B	1014 bp upstream
Rr3016	regulatory region 3016	224 bp proximal
Rr8303	regulatory region 8303	823 bp proximal
Tssr162142	transcription start site region 162142	1003 bp upstream