rs29258842 SNP Detail

Summary

• ID
  rs29258842
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:138109316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAAGCTA TTTATTATTA
  TTTTGTGGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGCG TGTGTGTGCG
  TGCACGTGCG CGTGCACGCG TGCCCACACA GGACTATGTA TGGGGTCAGA TGACAATGGA
  CATCAGTTCT CTCCCTCTGC CTTTCCATGG CTTCTAGCAC TGACCTTTTG TCTTAATGAG
  W
  TGTAAAAAGA GCTTGGGAGT ACTTTTATCT GATGGTTTAC ATTGCAAAGC ATATCTCTAT
  TTCTTGGTGA CTGTTGAATT TGGCTTCTTA TGGTCTTAAC TAATTTTGTT TGCTCTTTTG
  AAAGCCTCTC ACCATTGAGC TCCCATGGAT CTCCCTAGTA ACGTGATTGA GTCCAAAATA
  TACACCACCA TGCTTCAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38451634	NES09768020	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29258842					SNP	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38451634	NES09768020	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:138109316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22962	CpG island 22962	1298 bp proximal
Pwwp3b	PWWP domain containing 3B	1475 bp upstream
Rr3016	regulatory region 3016	685 bp proximal
Rr8303	regulatory region 8303	1284 bp proximal
Tssr162142	transcription start site region 162142	1464 bp upstream