rs29258843 SNP Detail

Summary

• ID
  rs29258843
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:138108627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTAAATA GCAACGCCTG
  TCAAGGTCTT GTGATGTTCA AAAGCAAAGT TTATCAGTTC TCTGCTCTTC CCATTATGTC
  CTTGATACGC ATTAGAACTA CTTTGACACA TTCCCAGGTT CCCACGAACA GAAACTATTT
  CTTAAACTTC ATTATGCTTC AATTTATTTG GGGGTCCAGG GAAAGGATGC CACTTTATGC
  M
  CATGGGGGTC CGAGAACACC TTGCAGAAAT CAGCTGTTTG CTTTCATAAC ATACCCACTC
  ACTGTAGCAT AATGTATATT TGAAATTTAC TATGTCAGTG GATCTTAAGT GTCTCACCAT
  ACACACAGTG TCAGTTTATG GTTGACAAGA TATCTGATAA AGGTGCTTGC TTAAAAATAT
  AAATCTGAGA ATTGAAATTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38451635	NES09768034	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29258843					SNP	C	C	C	C	C	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38451635	NES09768034	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:138108627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22962	CpG island 22962	1987 bp proximal
Rr3016	regulatory region 3016	1374 bp proximal
Rr8303	regulatory region 8303	1973 bp proximal