rs29263600 SNP Detail

Summary

• ID
  rs29263600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135664207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGTTAC GACTCAGAGA
  GAAGGGGTTT CAGCAGAGGT CACTTAGTTA AAAGGTGATA CTAGGACTGG AAAAATTTGG
  AGCTTTGAAG TCACTGGCCT TGACATTTGC TTTGGTTCTA GCCTCACTGG CAGACTAGAA
  TCTCCCCCGT TCCTGTTCGG CTGTTGACCC CGTGGGGTTT TCTGCTGCTT TTGCAAGAGT
  Y
  ACTGCTGAGG AGTAGGGTAC AGTGGTGAGC TAAAGCTTCA TCTCTCACCT TGGAGAGAAC
  AGGGCAGGAT CCTGAGGGAG TGCTACCTAG CCCTTCTCAT GACACTTCAG TAATTGCAGG
  GCTCTCTGGG CACCCACTCA TCTGCTTCCT GCCATGTTCC TCTTGTTACC TGCCTTTGGG
  AGCTTTGAAG AGCTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38457332	NES09765387	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29263600					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38457332	NES09765387	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135664207 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	within coordinates
Glra4	glycine receptor, alpha 4 subunit	within coordinates
Gm54085	predicted gene, 54085	1773 bp upstream
Rr2969	regulatory region 2969	1607 bp distal