rs29263648 SNP Detail

Summary

• ID
  rs29263648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135663016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTCCAC CAATCAGAAG
  AGGCAAGTAG TGGTCTTTCA ATTTCAGTTC AAACATGGGG ACCATCTTAC AGTGCTCCAT
  TTGAAAGGCA CTGGTGTCTG ACTCTTAGTT CTTAATAGAG GACGACTTAA AGTACCTTCC
  TTCTGTATGC GAGGAAAACC AAAAACACTA TCATTAATTC TCAAAGCAAT AACATCAATG
  Y
  TAAGCCAATA TATGGTTCTA ATAGTGGCAA ATATATTTTT GTTTGCTTGT TTTGAGACAG
  GGTCTCTATG TAGTCCTGGC TATCCTAGAA CTTGATATAT AGACCAGGCT GGCCTTAAAC
  TTACAAAACC TTTAGTCTCT ACCTCCCAAA TGCTGAGATT ATGGGCATGT GCTACCATGC
  CTAGCCTGGG CTAATATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38457340	NES09765442	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29263648					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38457340	NES09765442	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135663016 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	within coordinates
Glra4	glycine receptor, alpha 4 subunit	within coordinates
Rr2969	regulatory region 2969	416 bp distal