rs29263721 SNP Detail

Summary

• ID
  rs29263721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135660955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCAGTGAA TCTAAGGAAA TTGTGTGGAA ATATTTCTCA
  GGCTAGAAGA AAGTAATTTT ATACAGAAGA GAAAATATAT CTAATAAAGT AAGCTATTCT
  Y
  GGTTCTTTTT AGTTTTAATA TGTATCTTTT TGGCTTGCAC AGCAAAGATT AGTGCCCTAA
  AAGAGGCCTA AATTTGGATA TTAGATACTT AAGACAAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38457353	NES09765489	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C		T	C	T	T		T	C	T	T		T
ss46511995	mCV25214320	ABI	CRAMUS_MOUSE	f	SNP							T		C
ss134472586	ENSMUSSNP1442816	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
ss325980205	CHEV_X_133294745	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29263721					SNP	T	T	T	T	C	C	T	T	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38457353	NES09765489	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135660955 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	within coordinates
Glra4	glycine receptor, alpha 4 subunit	within coordinates
Rr2969	regulatory region 2969	846 bp proximal