rs29264404 SNP Detail

Summary

• ID
  rs29264404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135645729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCAATC CACGCCAGTA
  CAGATTGTTC TAGTGAATCC ATGCACTCGA AAATTTGAGA ACCACTGCTT TGGGCGGGGC
  GGGTGGGGGA GGGGAGCTAA AATGCAATAC TTTTTTTTGT ACACCACTAG AGGGTGCCAT
  AGAATGTAAA GCCAAATGTG TTCTGATATA CCCTGCATAG TATCAGTCTT GTTTTGCAGA
  Y
  TAAGAAATGT GTAGGTGTCA CCATCAGTGT TCCCCTTTCA GAGTCTGAAA CAAACTGGAC
  GTTATATATT GTTCCCTGCT TTGACTGATG TTGACAAACC ATTAAGATGA TGATAGGAAA
  GCAAACCAAG TATGGCGAAG TAACTTGATG CTTTTGATGC ATTTCCCCCT CTCTATTCTA
  GGGTATCACA CAAAAGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38457436	NES09766094	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29264404					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38457436	NES09766094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135645729 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	within coordinates
Morf4l2	mortality factor 4 like 2	1294 bp upstream
Rr406171	regulatory region 406171	within coordinates
Tssr164193	transcription start site region 164193	1835 bp upstream
Tssr164194	transcription start site region 164194	1288 bp upstream