rs29264410 SNP Detail

Summary

• ID
  rs29264410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135643846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAAACCT CTTGAATCTG
  CCGCTAGATG TCACCAAATC CCAGCCAAAG GAGTTACTGC TTGGTTCCCA GGGATTGTGA
  GATTGATTTT TTTGCTCCAC CCACTTCTTA TTTTATGGGC TCCCTAATCT CTGGCTGACT
  CATATATATA TCTTAAATTC CTAAAGATGA ATAAGATCAA GTTCTGTGAA GTAACAGTAC
  Y
  AGGCAAGGAA TTATATATCC GAAAATTCTG GTTAATTTCC TTAAGCAAAA AAAAAAAAAA
  AAAAAAAAGT CACCTGTTCT GGCACATCTT TTGTTTTTTC TCAGGATTGA TAAATGGGCC
  TAAATTCTGA TGCTAAAACC CTTCGTGAGC TGTGGCGCAG CCGCAGTATC AGCGCTTGGG
  AGGAAGAAGG GCCGCAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38457442	NES09766235	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29264410					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38457442	NES09766235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135643846 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	within coordinates
Cpgi22954	CpG island 22954	852 bp distal
Morf4l2	mortality factor 4 like 2	within coordinates
Rr406170	regulatory region 406170	1574 bp downstream
Rr406171	regulatory region 406171	1660 bp upstream
Tssr162050	transcription start site region 162050	1233 bp downstream
Tssr164188	transcription start site region 164188	1982 bp upstream
Tssr164189	transcription start site region 164189	1969 bp upstream
Tssr164190	transcription start site region 164190	1790 bp upstream
Tssr164191	transcription start site region 164191	1648 bp upstream
Tssr164192	transcription start site region 164192	1021 bp upstream
Tssr164193	transcription start site region 164193	44 bp downstream
Tssr164194	transcription start site region 164194	578 bp downstream