rs29264544 SNP Detail

Summary

• ID
  rs29264544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135643320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCGTTTTT TTGTTTGTTT
  TTGAGGCCTG TTGTAACTAG GTAGCCCTGG CTGGCCTGGA ACTCGGAGAT CCACCTGTCC
  CTTCACGGCC TTCGAGCGCT GGGATTAAAA GCATGCGCCA CTCCACCCAG TCCGATTTAA
  TTTTAGACCC TAGAGATGAT CATTATTCCC ACATTATAGT CCACCAAAAT AAACTTCTTC
  Y
  ATGGTTAAGA TTCAGAACTA TATTAGTAAC GTAAAAGGGC GTTTCTTTCA AGTTTCCAGT
  TGTACACCCC CTCCTCTCTG TCCCCAAGGC CTCCCCTTTG CCCTTCACCA AATTTACTGC
  GAATCTCCCT TATGCCCCCT CACCAGGTTT ATCGCTAAAT TGGCACACAA AATTTTAATG
  AAAACATAGG CAACTAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38457446	NES09766231	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29264544					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38457446	NES09766231	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135643320 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	386 bp upstream
Cpgi22954	CpG island 22954	326 bp distal
Morf4l2	mortality factor 4 like 2	within coordinates
Rr406170	regulatory region 406170	1048 bp downstream
Tssr162050	transcription start site region 162050	707 bp downstream
Tssr164188	transcription start site region 164188	1456 bp upstream
Tssr164189	transcription start site region 164189	1443 bp upstream
Tssr164190	transcription start site region 164190	1264 bp upstream
Tssr164191	transcription start site region 164191	1122 bp upstream
Tssr164192	transcription start site region 164192	495 bp upstream
Tssr164193	transcription start site region 164193	570 bp downstream
Tssr164194	transcription start site region 164194	1104 bp downstream