rs29264548 SNP Detail

Summary

• ID
  rs29264548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135642743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGCTAA GGTTCCCGCG
  AGTGGGAAGA GCGAGGGCAG ACCCGGGGCC ACGCCCCCGA GCCTGTTGCG CAACTCGCGG
  ACCTGGGGAG AGAGGAAAAA AAAACACCAA CGCCCCCCCA AAAAAACCAA AGGCAAAGGA
  ATGGTGAAGG TTTTGAGGTG TGAGGCGTGT GAGGGTGGTG AGTGCCACTG GGCGGATGCC
  Y
  GGATGCTTTG GAGAAACGGG GTGTCTGCGC GCACGCGGGC GCAGGCAGGC TCGCGTGGCT
  GTGGAGTGTG GGTGTGGGCG CACAGCCGCC CTCGTGGCGC TGGCGATGAT GGGTGTGCGC
  AGGCGTGCTG CCCTGGTGGG GACGGGAGGG GCCGTGTGTG AGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGCGCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38457450	NES09766269	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29264548					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38457450	NES09766269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135642743 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	963 bp upstream
Cpgi22954	CpG island 22954	within coordinates
Morf4l2	mortality factor 4 like 2	within coordinates
Rr406170	regulatory region 406170	471 bp downstream
Tssr162050	transcription start site region 162050	130 bp downstream
Tssr164188	transcription start site region 164188	879 bp upstream
Tssr164189	transcription start site region 164189	866 bp upstream
Tssr164190	transcription start site region 164190	687 bp upstream
Tssr164191	transcription start site region 164191	545 bp upstream
Tssr164192	transcription start site region 164192	62 bp downstream
Tssr164193	transcription start site region 164193	1147 bp downstream
Tssr164194	transcription start site region 164194	1681 bp downstream