rs29265060 SNP Detail

Summary

• ID
  rs29265060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135145613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAAGGAAA GCTAGGTGGG GGGTGAGTGG TACTGGCAGT
  TAGGAGCGTG AGACAGGAAG AGCCTATTAT TAAAAGAAGC CGAAAAGTTC CGTAGCTTCA
  R
  AAAATATGAC GCTCCTCTTT AGTAATCAGA GAGCTGCAAA AAGAACAACA ACAATAAAAC
  CAATCCGCAC ATTCTTTTTT TTTCTTCCTC CAGAAAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38458832	NES09777906	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G		G	G	A	G		G	G	G	G		G
ss46497666	mCV22340802	ABI	CRAMUS_MOUSE	f	SNP		A					A		G
ss325979742	CHEV_X_132779403	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29265060					SNP	G	A	A	G	G	G	A	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38458832	NES09777906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135145613 () rs orientation: forward

Symbol	Name	Function Class
Gm39535	predicted gene, 39535	within coordinates
Rr693756	regulatory region 693756	within coordinates
Rr693757	regulatory region 693757	151 bp proximal
Rr693758	regulatory region 693758	329 bp proximal
Tceal9	transcription elongation factor A like 9	216 bp upstream
Tssr162036	transcription start site region 162036	201 bp upstream
Tssr162037	transcription start site region 162037	253 bp upstream