rs29265062 SNP Detail

Summary

• ID
  rs29265062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135145212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTCTTCAG GCGACACCAC TTCTTGGTAA TAATACCACC
  AGCAGGCCTC TAGAGTTAAA CATGATTTTT CTTCTTTTTA AATAATTCCC CCAAGTAACA
  Y
  CACAATATAA TAAAAAATGT AAAGGCATAT ACTTTGAATG CATTTACTAA AAAACACTAG
  GCACTAGTAT AAGAAATGAA CATGTATGAA TTCACAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss38458834	NES09777904	PERLEGEN	MM_PANEL2	f	SNP	T		C	T		T	C	C		T		T
ss46479097	mCV22340801	ABI	CRAMUS_MOUSE	f	SNP		C	C		C	T
ss134470919	ENSMUSSNP7059511	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			T
ss325979741	CHEV_X_132779002	CHEVERUD	SCREENING_POP	f	SNP									T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs29265062					SNP	T	C	C	T	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38458834	NES09777904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135145212 () rs orientation: forward

Symbol	Name	Function Class
Gm39535	predicted gene, 39535	within coordinates
Rr693756	regulatory region 693756	196 bp proximal
Rr693757	regulatory region 693757	552 bp proximal
Rr693758	regulatory region 693758	730 bp proximal
Tceal9	transcription elongation factor A like 9	617 bp upstream
Tssr162036	transcription start site region 162036	602 bp upstream
Tssr162037	transcription start site region 162037	654 bp upstream