rs29265317 SNP Detail

Summary

• ID
  rs29265317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135143956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACAGGGA GTGGACCTTA
  CTGAAGATCT GTCAATCAGC TCAAAGCTTG CCACAGAGAC CGTATTAGTT CAAGTTCTGT
  TATTATAATG AAATATGCAA GGCTGAATAT TTTACCCCCC AAAAAAGCAG TTTATTTAGC
  ATTTAGTTTC TGAGACTCAA GGGCTTTGAC TTCTATGGTG AAGACTTACT ATGTCTTAGC
  Y
  TGATGGATGA CAACATGACA GGTATGTTTT TGAGAAAGAC AAGAAGCTGG AGAGCAATCA
  AAGCTGTGTG TTTGGGTGAC TCATCCTTGG CCTTTCATAA CAAGCCTTTT GTGAGAAATA
  ACCAGAGTTC CTTGAGAATT GCTTCAGTTC CTGTCAAAGG CAATACCATT CAGTGACCTA
  ATGGCTTCCT ACTGGTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38458839	NES09777918	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29265317					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38458839	NES09777918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135143956 () rs orientation: forward

Symbol	Name	Function Class
Gm39535	predicted gene, 39535	within coordinates
Rr693756	regulatory region 693756	1452 bp proximal
Rr693757	regulatory region 693757	1808 bp proximal
Rr693758	regulatory region 693758	1986 bp proximal
Tceal9	transcription elongation factor A like 9	1873 bp upstream
Tssr162036	transcription start site region 162036	1858 bp upstream
Tssr162037	transcription start site region 162037	1910 bp upstream