rs29266240 SNP Detail

Summary

• ID
  rs29266240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:134622892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAGGAA GGGAGATAGG
  AAGAGGGAGG ATGGGAGGGG AAAGGGAGGG AAGAGGGAGG GAGGGTGGAG GAGGAGGAAG
  ACATAGAGGG AGGTTGGAAA GAGGGGAAGG GAGGAGGGAG GAACAAAGGA GGAAGGAAGG
  TGGGAAGGAG GGAAGAGAGA CAGGGAGAGA GAACATAGGC AAAAGGCCTA CTCCTCTTGC
  Y
  ACCTTTTTGC CTGCTGAGAC TTCTCTACTC TAAATGGAAT AAAGATCATG GGCAGCCAAT
  CCTTTTTCAT TAGATCTGAG GCCTGCTCCA CAGAAGTGAA TATATGCCTG TTAGCCGACA
  CTGTAAAGAT GGTCAAAAAC TGGAGAGGCT ACAGGTCCTG GGGAGGGAAG ATTTACTATG
  ATTGTTTTGT TTTGCTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38460142	NES09761338	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29266240					SNP	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38460142	NES09761338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:134622892 () rs orientation: forward

Symbol	Name	Function Class
Gm61763	predicted gene, 61763	within coordinates
Tmsb15a	thymosin beta 15a	within coordinates
Tssr164175	transcription start site region 164175	1502 bp upstream