rs29266242 SNP Detail

Summary

• ID
  rs29266242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:134621247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGGGCAG AGGGTCACGA
  GTCAGACCTA GAAAGCCATT TCCCACTGCC TCAACTCTCC TCTCTGCCTT TGCCACTTCC
  TCAGAGCTGT CTATCCCCTT AGGCATCCCA AGATGGGACC CCCATGACTT CTCTCTCTGT
  GCCCCCAGAA AACCTCAAGG GGAAATAAAA CTTCTGTGAA CTGGGCTGGA GACCAGACTC
  Y
  ATTAGCCCAA CCCACCTGGC TTAGCCCCAT GGGGCCACAA ATTCTTACCT CTTCACAGCA
  AGACTCACCT ATCAGACTAA CAGCTCCACC TATCAGACCA ACAGCTCTGT CTTCAGTTAG
  CTTCAGGGCC AAACTGATGC TGCCCTTGCA GTACCTGCAA GTTTATAGGT GCCACAGAAG
  ACCCCACCCA GAGCCCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38460144	NES09761425	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29266242					SNP	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38460144	NES09761425	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:134621247 () rs orientation: forward

Symbol	Name	Function Class
Gm61763	predicted gene, 61763	741 bp upstream
Tmsb15a	thymosin beta 15a	within coordinates
Tssr164175	transcription start site region 164175	129 bp downstream