rs29266524 SNP Detail

Summary

• ID
  rs29266524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:134620422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACTGGGA CCTATCCTGT
  AAACCACTTC CATTATTCAA GGAAAAAAGG CACGTATTGG ATATTTTAAT TGCTACATTA
  ATTATGATTA GCTACTACTT CCATCGAGGC AATTTTAATT GAACATTAGT TTATGAACTG
  ACTATACCAA CTTTCACCTC TGTTCACCTC CACTAGAAAT TCCCACTACT TACTTTCCTT
  Y
  GAGGGCAGAG TATTTTTTAC TTCGGTGATG GTTTTCTTCA GTTTGGATTT ATCGAATCTC
  TCCACTTCCG ACAAGTCTGG TCTATCACCC ATTTTGACTG AAAGAAAGAA CCAAAAAGTA
  GTTAGTTGCC TACTAAAACT ATGACCAGAT TAGGAATAAA AGCTTAAAAA TTCATTTATT
  ATGAATAAAT AATTTGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38460146	NES09761423	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29266524					SNP	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38460146	NES09761423	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:134620422 () rs orientation: forward

Symbol	Name	Function Class
Gm61763	predicted gene, 61763	1566 bp upstream
Tmsb15a	thymosin beta 15a	within coordinates
Tssr164175	transcription start site region 164175	954 bp downstream